Publications

  1. Rodríguez-Maroto, G., Catalán, P. (co-first author), Nieto, C., Prat, S. and Ares, S. 2024. Mathematical Modeling of Photo- and Thermomorphogenesis in Plants. In: Chen, M. (Ed.), Thermomorphogenesis. Methods in Molecular Biology, vol 2795 (chapter 23). Humana, New York, NY. [PDF] (Book chapter)
  2. Zhou, Qi, Catalán, P. (co-first author), Bell, H., Baumann, P., Evans, R., Yang, J., Zhang, Z., Zappala, D., Zhang, Y., Blackburn, G. M., He, Y. and Jin, Y. 2023. An Ion-Pair Induced Intermediate Complex Captured in Class D Carbapenemase Reveals Chloride Ion as a Janus Effector Modulating Activity. ACS Central Science 9, 2339 [PDF] [SM]
  3. Catalán, P., García-Martín, J. A., Aguirre, J., Cuesta, J. A. and Manrubia, S. 2023. Entropic contribution to phenotype fitness. Journal of Physics A: Mathematical and Theoretical 56, 345601. [PDF]
  4. Nieto, C., Catalán, P. (co-first author), Luengo, L. M., Legris, M., López-Salmerón, V., Davière, J. M., Casal, J. J., Ares, S. and Prat, S. 2022. COP1 dynamics integrate conflicting seasonal light and thermal cues in the control of Arabidopsis elongation. Science Advances 8, eabp8412. [PDF] [SM]
  5. Catalán, P., Wood, E., Blair, J. M. A., Gudelj, I., Iredell, J. R. and Beardmore, R. E. 2022. Seeking patterns of antibiotic resistance in ATLAS, an open, raw MIC database with patient metadata. Nature Communications 13, 2917. [PDF] [SM]
  6. Manrubia, S., Cuesta, J. A., Aguirre, J., Ahnert, S. E., Altenberg, L., Cano, A. V., Catalán, P., Díaz-Uriarte, R., Elena, S. F., García-Martín, J. A., Hogeweg, P., Khatri, B. S. Krug, J., Louis, A. A., Martin, N. S., Payne, J. L., Tarnoswki, M. J., Weiß, M. 2022. The long and winding road to understanding organismal construction: Reply to comments on” From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics”. Physics of Life Reviews 42, 19-24. [PDF]
  7. Manrubia, S., Cuesta, J. A., Aguirre, J., Ahnert, S. E., Altenberg, L., Cano, A. V., Catalán, P., Díaz-Uriarte, R., Elena, S. F., García-Martín, J. A., Hogeweg, P., Khatri, B. S. Krug, J., Louis, A. A., Martin, N. S., Payne, J. L., Tarnoswki, M. J., Weiß, M. 2021. From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics. Physics of Life Reviews 38, 55-106. [PDF]
  8. Reding, C., Catalán, P., Jansen, G., Bergmiller, T., Wood, E., Rosenstiel, P., Schulenburg, H., Gudelj, I. and Beardmore, R. 2021. The Antibiotic Dosage of Fastest Resistance Evolution: gene amplifications underpinning the inverted-U. Molecular Biology and Evolution msab025, https://doi.org/10.1093/molbev/msab025. [PDF]
  9. Catalán, P., Manrubia, S. and Cuesta, J. A. 2020. Populations of genetic circuits are unable to find the fittest solution in a multilevel genotype–phenotype map. Journal of the Royal Society Interface 17:20190843. [PDF] [SM]
  10. Catalán, P., Elena, S. F., Cuesta, J. A. and Manrubia, S. 2019. Parsimonious Scenario for the Emergence of Viroid-Like Replicons De Novo. Viruses 11:425. [PDF]
  11. García-Martín, J.A., Catalán, P., Manrubia, S. and Cuesta, J. A. 2018. Statistical theory of phenotype abundance distributions: a test through exact enumeration of genotype spaces. Europhysics Letters 123:2800. [PDF]
  12. Aguirre, J., Catalán, P., Cuesta, J. A. and Manrubia, S. 2018. On the networked architecture of genotype spaces and its critical effects on molecular evolution. Open Biology 8:180069. [PDF]
  13. Catalán, P., Wagner, A., Manrubia, S. and Cuesta, J. A. 2018. Adding levels of complexity enhances robustness and evolvability in a multilevel genotype–phenotype map. Journal of the Royal Society Interface 15:20170516. [PDF] [SM]
  14. Catalán, P., Arias, C.F., Cuesta, J. A. and Manrubia, S. 2017. Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation. Biology Direct 12:7. [PDF]
  15. Catalán, P., Delgado, J.A., Jiménez, M.D. and Balaguer, L. 2016. Sink strength manipulation in branches of a Mediterranean woody plant suggests sink-driven allocation of biomass in fruits but not of nutrients in seeds. Acta Physiologiae Plantarum 38:193. [PDF]
  16. Planchuelo, G., Catalán, P. and Delgado, J.A. 2016. Gone with the wind and the stream: Dispersal in the invasive species Ailanthus altissima. Acta Oecologica 73:31-37. [PDF]
  17. Planchuelo, G., Catalán, P., Delgado, J.A. and Murciano A. 2016. Estimating wind dispersal potential in Ailanthus altissima: The need to consider the three-dimensional structure of samaras. Plant Biosystems, 151:316-322. [PDF]
  18. Catalán, P., Seoane, J.M. and Sanjuán, M.A.F. 2015. Mutation-selection equilibrium in finite populations playing a Hawk-Dove game. Communications in Nonlinear Science and Numerical Simulations 25:66-73. [PDF]
  19. Arias, C.F., Catalán, P., Manrubia, S and Cuesta, J.A. 2014. toyLIFE: a computational framework to study the multi-level organization of the genotype-phenotype map. Scientific Reports 4:7549. [PDF]
  20. Catalán, P., Vázquez de Aldana, B.R., De las Heras, P., Fernández-Seral, A. and Pérez-Corona, M.E. 2013. Comparing the allelopathic potential of exotic and native plant species on understory plants: are exotic plants better armed? Anales de Biología 35: 65-74.